{
  "_id": "6a2531f84b233be198396140",
  "Package": "SHIP",
  "Type": "Package",
  "Title": "Shrinkage Covariance Incorporating Prior Knowledge",
  "Version": "2.0.2",
  "Authors@R": "c(\nperson(\"Vincent\", \"Guillemot\",\nemail = \"vincent.guillemot@pasteur.fr\",\nrole = c(\"aut\", \"cre\")),\nperson(\"Monika\", \"Jelizarow\", role = \"aut\")\n)",
  "Description": "The SHIP-package allows the estimation of various types of\nshrinkage covariance matrices. These types differ in terms of\nthe so-called covariance target (to be chosen by the user), the\nhighly structured matrix which the standard unbiased sample\ncovariance matrix is shrunken towards and which optionally\nincorporates prior knowledge. The shrinkage intensity is\nobtained via an analytical procedure.",
  "License": "GPL (>= 2)",
  "Encoding": "UTF-8",
  "Packaged": {
    "Date": "2026-06-07 08:52:54 UTC",
    "User": "root"
  },
  "NeedsCompilation": "no",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Repository": "https://vguillemot.r-universe.dev",
  "Date/Publication": "2025-03-18 16:59:38 UTC",
  "RemoteUrl": "https://github.com/vguillemot/ship",
  "RemoteRef": "HEAD",
  "RemoteSha": "90a241d35dbc48840e795c30641297f58eb68f88",
  "Author": "Vincent Guillemot [aut, cre],\nMonika Jelizarow [aut]",
  "Maintainer": "Vincent Guillemot <vincent.guillemot@pasteur.fr>",
  "MD5sum": "cbb15fe4d25861b18884f4bb3411c8a3",
  "_user": "vguillemot",
  "_type": "src",
  "_file": "SHIP_2.0.2.tar.gz",
  "_fileid": "69918a29b638f15d0c62bbd7d9209172f2890a1342a4ca418308bdd270e0a7aa",
  "_filesize": 236300,
  "_sha256": "69918a29b638f15d0c62bbd7d9209172f2890a1342a4ca418308bdd270e0a7aa",
  "_created": "2026-06-07T08:52:54.000Z",
  "_published": "2026-06-07T08:55:20.019Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79945806042,
      "time": 93,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7462549853"
    },
    {
      "job": 79945806043,
      "time": 88,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7462549161"
    },
    {
      "job": 79945806046,
      "time": 116,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7462550400"
    },
    {
      "job": 79945806059,
      "time": 121,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7462550726"
    },
    {
      "job": 79945676880,
      "time": 131,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7462538579"
    },
    {
      "job": 79945806033,
      "time": 79,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7462548120"
    },
    {
      "job": 79945806136,
      "time": 68,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7462546659"
    },
    {
      "job": 79945806070,
      "time": 68,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7462546853"
    },
    {
      "job": 79945806081,
      "time": 59,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7462545615"
    }
  ],
  "_buildurl": "https://github.com/r-universe/vguillemot/actions/runs/27087843140",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/vguillemot/ship",
  "_commit": {
    "id": "90a241d35dbc48840e795c30641297f58eb68f88",
    "author": "Vincent  GUILLEMOT <vincent.guillemot@pasteur.fr>",
    "committer": "Vincent  GUILLEMOT <vincent.guillemot@pasteur.fr>",
    "message": "FIX equations\n",
    "time": 1742317178
  },
  "_maintainer": {
    "name": "Vincent Guillemot",
    "email": "vincent.guillemot@pasteur.fr",
    "login": "vguillemot",
    "description": "",
    "uuid": 3502138
  },
  "_registered": true,
  "_dependencies": [],
  "_owner": "vguillemot",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "vguillemot",
      "count": 8,
      "uuid": 3502138
    }
  ],
  "_userbio": {
    "uuid": 3502138,
    "type": "user",
    "name": "Vincent Guillemot"
  },
  "_downloads": {
    "count": 149,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SHIP"
  },
  "_devurl": "https://github.com/vguillemot/ship",
  "_searchresults": 17,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/SHIP.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/vguillemot/ship",
  "_realowner": "vguillemot",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2010-05-05"
    },
    {
      "version": "1.0.1",
      "date": "2012-10-29"
    },
    {
      "version": "1.0.2",
      "date": "2013-12-23"
    },
    {
      "version": "2.0.3",
      "date": "2025-03-22"
    }
  ],
  "_exports": [
    "build.target",
    "check.path",
    "shrink.estim",
    "target.help",
    "targetCor",
    "targetD",
    "targetF",
    "targetG",
    "targetGpos",
    "targetGstar"
  ],
  "_datasets": [
    {
      "name": "expl",
      "title": "Small example extracted from a microarray data set.",
      "object": "expl",
      "file": "expl.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "build.target",
      "title": "Creating a covariance target, optionally by using information from KEGG pathways.",
      "topics": [
        "build.target"
      ]
    },
    {
      "page": "expl",
      "title": "Small example extracted from a microarray data set.",
      "topics": [
        "expl"
      ]
    },
    {
      "page": "shrink.estim",
      "title": "Shrinkage estimator of the covariance matrix, given a data set and a covariance target.",
      "topics": [
        "shrink.estim"
      ]
    },
    {
      "page": "targetCor",
      "title": "Computation of the target Cor.",
      "topics": [
        "targetCor"
      ]
    },
    {
      "page": "targetD",
      "title": "Computation of the diagonal target D ('diagonal, unequal variances').",
      "topics": [
        "targetD"
      ]
    },
    {
      "page": "targetF",
      "title": "Computation of target F ('constant correlation model').",
      "topics": [
        "targetF"
      ]
    },
    {
      "page": "targetG",
      "title": "Computation of target G ('knowledge-based constant correlation model').",
      "topics": [
        "targetG"
      ]
    },
    {
      "page": "targetGpos",
      "title": "Computation of the target Gpos.",
      "topics": [
        "targetGpos"
      ]
    },
    {
      "page": "targetGstar",
      "title": "Computation of the target Gstar.",
      "topics": [
        "targetGstar"
      ]
    }
  ],
  "_readme": "https://github.com/vguillemot/ship/raw/HEAD/README.md",
  "_rundeps": [],
  "_score": 2.929418925714293,
  "_indexed": true,
  "_nocasepkg": "ship",
  "_universes": [
    "vguillemot"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.0.2",
      "date": "2026-06-07T08:54:32.000Z",
      "distro": "noble",
      "commit": "90a241d35dbc48840e795c30641297f58eb68f88",
      "fileid": "e2d8ace3150868d440004ed478a07f8872e1c205091ae9b9ad7c6e15f95d0694",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vguillemot/actions/runs/27087843140"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.0.2",
      "date": "2026-06-07T08:54:25.000Z",
      "distro": "noble",
      "commit": "90a241d35dbc48840e795c30641297f58eb68f88",
      "fileid": "07a666390f8887fa37aaa789d9ef369b8508f3f7e48f32ab3e41152b9cb370a9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vguillemot/actions/runs/27087843140"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.0.2",
      "date": "2026-06-07T08:54:39.000Z",
      "commit": "90a241d35dbc48840e795c30641297f58eb68f88",
      "fileid": "554e70dd32f01649071decc5564c49b322a94076a2df94fee2b7b343346b3c73",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vguillemot/actions/runs/27087843140"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.0.2",
      "date": "2026-06-07T08:54:40.000Z",
      "commit": "90a241d35dbc48840e795c30641297f58eb68f88",
      "fileid": "c0b7e5e9b72f2922e465685db758485613743b59a30a9603575b8f1facb92c61",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vguillemot/actions/runs/27087843140"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.0.2",
      "date": "2026-06-07T08:54:27.000Z",
      "commit": "90a241d35dbc48840e795c30641297f58eb68f88",
      "fileid": "ee54933640d3a0195f48351cda2ccd84dfc5c4a7303c530a229f94ece8992fc7",
      "status": "success",
      "buildurl": "https://github.com/r-universe/vguillemot/actions/runs/27087843140"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.0.2",
      "date": "2026-06-07T08:53:59.000Z",
      "commit": "90a241d35dbc48840e795c30641297f58eb68f88",
      "fileid": "eedc9afabb9af39808dc6490974ed4460824e0e535ea2a9e0a61e7204e605c12",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vguillemot/actions/runs/27087843140"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.0.2",
      "date": "2026-06-07T08:54:03.000Z",
      "commit": "90a241d35dbc48840e795c30641297f58eb68f88",
      "fileid": "29fcb5b413aab099bd350b1fc88dcbf9b813ce0a92abf5d830612184dfcbcd4a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vguillemot/actions/runs/27087843140"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.0.2",
      "date": "2026-06-07T08:53:53.000Z",
      "commit": "90a241d35dbc48840e795c30641297f58eb68f88",
      "fileid": "1a87f90e77555847a43d5c8f1ce266ea554653df8cb3f01c7a6eb237e8608fad",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vguillemot/actions/runs/27087843140"
    }
  ]
}